Package: EpitoScope
Title: Interactive QC, Visualization, and Immunogenicity Assessment of
        Immunopeptidomics Data
Version: 1.0.0
Authors@R: 
    person("Yannic", "Chen", , "yannicchn@gmail.com", role = c("aut", "cre"))
Description: An interactive R/Shiny application that unifies quality
        control, visualization, comparative statistics, and MHC class
        I/II binding prediction for mass-spectrometry-based
        immunopeptidomics data. It ingests search-engine outputs from
        PEAKS, FragPipe, DIA-NN, and Spectronaut through a configurable
        column-mapping layer, and provides publication-ready figure
        export and relational storage of processed results and binding
        predictions.
License: GPL-3
URL: https://github.com/yannic-chen/EpitoScope
BugReports: https://github.com/yannic-chen/EpitoScope/issues
Encoding: UTF-8
biocViews:
Depends: R (>= 4.3)
Imports: shiny, bs4Dash, DT, rhandsontable, shinyjs, DBI, RSQLite,
        dplyr, tidyr, purrr, stringr, data.table, arrow, memoise, curl,
        httr, jsonlite, ggplot2, ggrepel, ggseqlogo, ggVennDiagram,
        ggnewscale, eulerr, heatmaply, viridis, patchwork, plotly,
        igraph, ggraph, visNetwork, ComplexUpset, ComplexHeatmap,
        clusterProfiler, org.Hs.eg.db, rmarkdown, grid, grDevices,
        stats, utils, tools, limma, digest, viridisLite, scales,
        gtable, rlang, bslib, RColorBrewer
Suggests: knitr, htmltools, fastcluster, testthat (>= 3.0.0)
Roxygen: list(markdown = TRUE)
RoxygenNote: 8.0.0
Config/testthat/edition: 3
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libmagick++-dev gsfonts
        libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev perl
        zlib1g-dev libclang-dev
Repository: https://yannic-chen.r-universe.dev
Date/Publication: 2026-09-25 18:48:20 UTC
RemoteUrl: https://github.com/yannic-chen/EpitoScope
RemoteRef: HEAD
RemoteSha: dd6d4b200a37d8f89d4a47b38ec154a53a6ea252
NeedsCompilation: no
Packaged: 2026-09-25 22:39:26 UTC; root
Author: Yannic Chen [aut, cre]
Maintainer: Yannic Chen <yannicchn@gmail.com>