Package: EpitoScope 1.0.0

Yannic Chen

EpitoScope: Interactive QC, Visualization, and Immunogenicity Assessment of Immunopeptidomics Data

An interactive R/Shiny application that unifies quality control, visualization, comparative statistics, and MHC class I/II binding prediction for mass-spectrometry-based immunopeptidomics data. It ingests search-engine outputs from PEAKS, FragPipe, DIA-NN, and Spectronaut through a configurable column-mapping layer, and provides publication-ready figure export and relational storage of processed results and binding predictions.

Authors:Yannic Chen [aut, cre]

EpitoScope_1.0.0.tar.gz
EpitoScope_1.0.0.zip(r-4.7-any)EpitoScope_1.0.0.zip(r-4.6-any)EpitoScope_1.0.0.zip(r-4.5-any)
EpitoScope_1.0.0.tgz(r-4.6-any)EpitoScope_1.0.0.tgz(r-4.5-any)
EpitoScope_1.0.0.tar.gz(r-4.7-any)EpitoScope_1.0.0.tar.gz(r-4.6-any)
EpitoScope_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
EpitoScope/json (API)

# Install 'EpitoScope' in R:
install.packages('EpitoScope', repos = c('https://yannic-chen.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yannic-chen/epitoscope/issues

On CRAN:

Conda:

3.08 score 1 stars 1 exports 184 dependencies

Last updated from:dd6d4b200a. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK339
source / vignettesOK271
linux-releaseOK359
macos-releaseOK182
macos-oldrelOK163
windows-develOK189
windows-releaseOK213
windows-oldrelOK201
wasm-releaseOK247

Exports:run_app

Dependencies:admiscaisdkAnnotationDbiapeaplotarrowaskpassassertthatbase64encBiobaseBiocBaseUtilsBiocGenericsBiostringsbitbit64blobbs4DashbslibcacachemcallrcirclizecliclueclusterclusterProfilercodetoolscolorspacecommonmarkComplexHeatmapComplexUpsetcpp11crayoncrosstalkcurldata.tableDBIdendextenddigestdoParallelDOSEdplyrDTeggenrichitenrichploteulerrevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverforcatsforeachfreshfsgclusgdtoolsgenericsGetoptLongggforceggfunggiraphggnewscaleggplot2ggplotifyggraphggrepelggseqlogoggtangleggtreeggVennDiagramGlobalOptionsglueGO.dbGOSemSimgraphlayoutsgridExtragridGraphicsgsongtableheatmaplyhighrhtmltoolshtmlwidgetshttpuvhttrhttr2igraphIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixmatrixStatsmemoisemgcvmimenlmeopensslorg.Hs.eg.dbotelpatchworkpermutepillarpkgconfigplotlyplyrpngpolyclipprocessxpromisespspurrrqapqvalueR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenregistryreshape2rhandsontablerjsonrlangrmarkdownRSQLiterstudioapiS4VectorsS7sassscalesscatterpieSeqinfoseriationshapeshinyshinyjssourcetoolsstatmodstringistringrsyssystemfontstibbletidydrtidygraphtidyrtidyselecttidytreetinytextreeioTSPtweenrutf8vctrsveganvennviridisviridisLitevisNetworkwaiterwebshotwithrxfunxtableXVectoryamlyulab.utils